Basic Information | |
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Taxon OID | 3300024262 Open in IMG/M |
Scaffold ID | Ga0210003_1133782 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1082 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltic Sea | |||||||
Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F013716 | Metagenome | 269 | Y |
F020111 | Metagenome | 226 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210003_11337823 | F020111 | AGGAG | MKSLIGHNNPPKERDPNWKSISINIFDYKDLEIIAKNLLQKKNCFRLLEGKQPLKKISIPYAISVLINDKTIAMNNFEVQDNGRNIWEQTERKLLRTYNSKGGLKSNEK |
Ga0210003_11337824 | F013716 | N/A | WNCVNEETCLMNKYELKYIFEQETLKVENLIDVVGKNAHHIQDLSAELKKKDENIDKLIARLNDKREEVYKLKNIIQSQTQKNLREYHFGEESVDN |
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