NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1010415

Scaffold Ga0210003_1010415


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1010415 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6414
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F040126Metagenome / Metatranscriptome162N
F049672Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0210003_10104155F008425AGGAMPDKDITYKQFVAHMDKGNKVYMKKPKSWQKVWFWWESKREKWFLNKAFDKREGGVVKPEPSVWITAKQMESHMDHMVRMGYKYYINE
Ga0210003_10104156F024797N/AMKLSRKITYKNKQLIMSEFLRTGMGRKLLEQDIPKLTSVLERIANQMERSNKLEEKKFILEERIQKLTIKESTNKPPERPNNLLGL
Ga0210003_10104157F040126N/AMKKLPVFEDFVPVGYGANNSASFSLGGVGTGRNETGYNMDAIVGPVQTLGNHVAEQAHSYESNDNEKHTAESYITEAKKHINDKIDEACETYSAMDESNLNEGTDIGMWNQGGLKGNENVQVTTFVGPKDIEDFGLGRKCMQINVGRSYVALNPADIVELKELLKNYKV
Ga0210003_10104159F049672N/AMAKIKLIPKFESFSISDGVVSEASDYEFNPGEAAARLKTREKENIQRYRAAQERGDNYAIELYQLKVQMDKIDLEALKVQTAIHKLKQKNGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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