| Basic Information | |
|---|---|
| Taxon OID | 3300024262 Open in IMG/M |
| Scaffold ID | Ga0210003_1007727 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7822 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (12.50%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Baltic Sea | |||||||
| Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008425 | Metagenome / Metatranscriptome | 333 | Y |
| F013783 | Metagenome / Metatranscriptome | 268 | Y |
| F015210 | Metagenome / Metatranscriptome | 256 | Y |
| F024797 | Metagenome / Metatranscriptome | 204 | Y |
| F032332 | Metagenome | 180 | Y |
| F051263 | Metagenome / Metatranscriptome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210003_10077271 | F013783 | AGTAG | LILEGITFKLALDFFIFLKKNRITSTSIKVDFFDKVKHEYIDFADVAAMDAYYKKTYIPLDNCFLGDLVSISFFLATSDLYDFRTEFKAMDVTNNLTLETGSAYDRQRNAGRQVLINRQIQLIKNAVADYVKYYLELKYIYVTGIYSPCYAVPGWSENTWYLQSFRDAFISSRDTSQFPYSNVKIEEFPPE |
| Ga0210003_100772711 | F008425 | N/A | MSAEDITYKQFVAHLDKGNKTYVKKPKSWQKVWFWWESKKDKWFLNKAYEKREDGAVIKEPSVFITAKQMESHLGFMERQGYKYHIDE |
| Ga0210003_100772712 | F024797 | N/A | MSEFFRTQMGRKLIDGDIPRLVNVLERIANQLEKKNKLEEKKFVLEEKIQKLSIKESRNK |
| Ga0210003_100772714 | F051263 | N/A | MNIPNFESFELNEAEKHEFNPNETAERLKRREQQNLDRYKAAVEREDAFGITYYKYRIAVDKIDLQKLKLMTQIHQLKQKYQK |
| Ga0210003_10077273 | F015210 | N/A | MKRNAITIFDVDDTLVVTKSKIKVHNPKTGFSADLTPQEFNTFKTMPNDKMDFSDFQSLDILKGGKIIEWVFSILRRAIAKGAPVGIITARDDSKLIQQFLAHNGININPQYIFAINDTSLGFKGSTSEKKKEAFKKFIDMGFNDFTFFDDDEENIKLAKSLSKEPNIKMKAKLIKSKWIPKFEDFNQR |
| Ga0210003_10077278 | F032332 | N/A | MESNPRNGFGDDFIRSLLLTLEQTDFNQFMDLSYHVLMQSPASVLKRKDSIEAKVESINGLIKYFEEVEEYEKCTNLQKLKLMLFLNTPDDEDQTK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |