NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1005604

Scaffold Ga0210003_1005604


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1005604 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9595
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008563Metagenome / Metatranscriptome331Y
F014036Metagenome / Metatranscriptome266Y
F026041Metagenome / Metatranscriptome199Y
F102062Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0210003_100560410F026041N/AMIEIIKEKPIKSSTSVEGIIVQVTGGQWYGITLFQAARNPWMGRCGKSTTTGRMDFSRGTEIFQTRFATKPENFEELKAMLISVLNGAEPIKHTINYN
Ga0210003_100560414F102062GGAGMKILIWIKREEAVSGVITKYYTYLPFNVAYQEWAQVEITQDEFARLEDREVTDR
Ga0210003_10056045F008563N/AMAKYKIESHMSIAFATIGGQKYLFPGWIPVEDHISFNDVEVTNPYANQKSETYTITGSRGDKYTVTNRNGKFSCDCPAGKFRGSCKHSTQVQKELSLVE
Ga0210003_10056049F014036N/AMFVSIMEIFGCLFIIGLSFVFHCVVYEDDYVKKWYWKVLIGGGILALTFAAVMGY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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