NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228675_1023991

Scaffold Ga0228675_1023991


Overview

Basic Information
Taxon OID3300024247 Open in IMG/M
Scaffold IDGa0228675_1023991 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 36D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1444
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008104Metagenome / Metatranscriptome339Y
F009717Metagenome / Metatranscriptome314Y
F016593Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0228675_10239912F009717N/AMYIRINSSVNLSSGLTIPSGSVVTIAEGYADVKSEADGIIPAQVATFLYASEAAMQGDATPVQGVADFNPVFSGLELAVADYQNKAAEALLIDAVKGALAGVYGEANVEVVA
Ga0228675_10239913F016593N/AMKRLKTGVVNTLSFVKLSTFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLINNDLEGGEYELTITNSGDSYKYLTEVQDYTVTQTGTGIYGSTVRFTDL
Ga0228675_10239914F008104N/AMGLLSNISEFFATNTYVQATEHSIATNELENSIEDLNGRYKLGHTLVGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMVVGNDIDYSDDFAKTNKAKAELKAFVNHCGGNNKGLYEVLTHAAFQYEHKGALALYVRWNKERTKILEFKSLDPKGVRVATPNDKGEVTHYIVRRSFGYG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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