| Basic Information | |
|---|---|
| Taxon OID | 3300024240 Open in IMG/M |
| Scaffold ID | Ga0224522_1004148 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - C.F.S.T25 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4131 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0466 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040985 | Metagenome | 160 | Y |
| F041560 | Metagenome | 159 | Y |
| F076791 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224522_10041482 | F040985 | N/A | MIDITETPNLVSFAGNPVIFEACSSDYLVSLGSRAVFELVVSGIDTNVGHSFTLKFAGKTLVFKSAGITEFDGLLFEVAYYGWTYIDFAFSIYQCLLENYDIQKAFDVMIGPVGTTERKITLQAKAAGADYSVTLTNVGVYGVAQGTNTPGTDDVYRDYFGILCLILDSYGNAIGEDIKPSDIMGGARFDISDYLKSKFAAWELTRFEFPELTGNIRVHGWDYLLKYRVSFAETIAGKVKGLFSTGWKYCIAGGVNHELLTSLNENYKEYFDIEANKSRFLSWLPLTKYSRSGVTEKLFFLFQNNPDLVQYRLVVVVTFTDYTHKIINATPLASYTPYTVAEFKVGFDHLNLVNAQYGKTVQSWEVMLMDSNDEYLSERRIYINDSRVFDNERIFFYRNSFSAYDTFRFLGKSELNLEYERSTGSTVKEEKYSFFNAPSKQFSAKETEICKANSGWISLEEKNCLRELLLSTEAYELIGKELFQIVVKSAKITPFLKDGEYLYNLEIEYDRSYQNSFYSVHIPESSANPIVLPQPLTWDNIDVSFDNMEITFDQIEY |
| Ga0224522_10041483 | F041560 | N/A | MLTILIADQPLDLSDDFSVSLNLKSPLFNDVGDYSFPFKVPSTAMNMAILGWKNRLASTRSIYETYDGSIRWNGMVLFVGQIRIKTASDKSFEGTIYINKGNFNYEVRDLMLDRVDFGMKSFASDQEAVDYFNWSLTHFYPEVDFSLPEISNVDFFDPQATNPELMSYNHIFPDGLLHKTTSDGTQRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSTELSRLVIYNSVNLSEVIFGMQQLYYCRLLPKVKVSEFISGLEKWFNCCFLADSKQRVVRIVSNKDVLLRSELVEFSKNVLTISQEIPDQITGFRFLLGPDSGDKVYQAQLDAEKGMTDYIKGAVQRFSDIPPYPFTWLGDIYYVVDTNQWWVLGVNGITFLIEWQQLPTGPVLTDKFFYKWGDDKNKYETIFSSLSDKYIVVSCGNLGTDKDKITPRLFYVGMVSVGGWGSPAHLRGLANNGNLSLRYTGSSGLFNLYWKDWVNWIMDTRKSVKIEKQMDFIELKELDFTKRYRINGINYLISEISVTLNKSSIKSAQLKCFTAP |
| Ga0224522_10041484 | F076791 | N/A | TLISETGQELVIDPKTTKNLMINYPQVIDAINFARVPQRAVGRYMDSPASTLVVNPPAIDPEFTASINKLNSLIESGIPAFISFDHLRETTNRVNQIEAEVSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |