NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1011652

Scaffold Ga0247724_1011652


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1011652 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1299
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062460Metagenome / Metatranscriptome130N
F065414Metagenome / Metatranscriptome127N
F069678Metagenome / Metatranscriptome123N
F093242Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10116522F062460N/AMNLEKSIIEAVTTAVKEIRQESCIEKQVKSLMKIYDAIVVKDKEISTKSGLKTTRKRKRSISHE
Ga0247724_10116523F069678N/AMSNQEQLVEGTSLTETLVNTVKTELVYKLKLCIDEINTEVDEVTYENIWSYEKMNKILANLRKLDPNWTIDGGFDKPGMWDLTDMLEGILKHRIIDIEIDYQDIENLDLESYNEFHKALIDMRKRDPNWSINGTRRNLDKPIKSRNIGLPTNSSESESENEHPDDRTMAGTAHADR
Ga0247724_10116524F093242N/AMEYSNPEKNKIIDIIQDIMNRIDTNTNYNSNYENFLRMYAAIRKLKTKEPGLKFKVSNIPTRENNHLSKKRNEN
Ga0247724_10116525F065414N/ANIQKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKEKFKLIFKILKRIKAIEPDNHLNLASYIVSRNGV
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