NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1006446

Scaffold Ga0247724_1006446


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1006446 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1792
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017597Metagenome / Metatranscriptome239N
F024477Metagenome / Metatranscriptome205Y
F037570Metagenome / Metatranscriptome167N
F057095Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10064461F057095N/ANVSQYILVHYFKIDDLIKKESYPLKEVITFHNKRCRIQKSKDIATLEKVAIANRLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSGQWSNEYQET
Ga0247724_10064462F037570GGAMNIKKLDLLKIRNLKFRASQRQVVIDRLLRKKDPERDLWKVSIKTLIILAKIKFRCEELERISENLQQTVINGY
Ga0247724_10064465F024477N/AVSYDIIKNSSKVSSFELLIKSITLIEKVEDFYKELDQITSYRFKCHGKPDPDIYYMKDIIKIRLIELERLQTQRINELIKLSQ
Ga0247724_10064466F017597N/AMKKVFRSGKLLIKLAIKKKELIKITKSSKSTLIKTEMIARILITALKVKQVIVTRFQVNQTNNLQLWGQSPNISSA
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