| Basic Information | |
|---|---|
| Taxon OID | 3300024239 Open in IMG/M |
| Scaffold ID | Ga0247724_1004563 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2183 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.7 | Long. (o) | -98.594 | Alt. (m) | Depth (m) | 3933 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008943 | Metagenome / Metatranscriptome | 325 | Y |
| F074802 | Metagenome / Metatranscriptome | 119 | N |
| F090316 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247724_100456310 | F090316 | GAGG | MPDDLQREEELFFKALEEYKEKKSQEPKDKTTNTLPAVIAATL |
| Ga0247724_10045633 | F074802 | AGGAG | MTKCTCSYIQIGYKTSNTKNLNPDCPLHGTDSVWYNSPEQVKKRDERSQRLRELYDAARKAREKLE |
| Ga0247724_10045636 | F008943 | GGAG | MKNFEGIDWAILSVFFIIIVAATSITYSEQQQRALFQQTYNKNLECRQALKNNTKSFVNEICGPIPVVGDFVK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |