| Basic Information | |
|---|---|
| Taxon OID | 3300024239 Open in IMG/M |
| Scaffold ID | Ga0247724_1004411 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2232 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.7 | Long. (o) | -98.594 | Alt. (m) | Depth (m) | 3933 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008351 | Metagenome / Metatranscriptome | 334 | Y |
| F013610 | Metagenome / Metatranscriptome | 269 | N |
| F018161 | Metagenome / Metatranscriptome | 236 | N |
| F032250 | Metagenome / Metatranscriptome | 180 | N |
| F080871 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247724_10044111 | F013610 | N/A | METSTSTDNPEKKQEIEKQKTLVADLFSTLNLVFTQTKLGVERSDLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVIEDKWDCDTNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQ |
| Ga0247724_10044112 | F018161 | N/A | VLTIMSELENKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMKELRSLDPEYPVTDIVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEMSSPQSDTSDERKPFPALNSKH |
| Ga0247724_10044113 | F008351 | N/A | MDSDQETESPEMCSEEPVHTVKESVEKLFSLINTEFSRPSVSDEEEDFSLLKQICEAKASILKDNPFWSIFDYTTMLIGLAMGRIDWLDVQGPWDSRGNKEMYQVFKKNIRNLKEYSPCWKLDEQDAIKHSICPNCGTVKSILGKETLLESNPGQ |
| Ga0247724_10044114 | F032250 | N/A | MQMCTVEKEKSFLKMQNEANSSQAEINRGANTISTQVFKERDTYLQNILQIMEAVKEETVYQDNWLQYAVLHQNLMKLKEIDPNWKLVSYYEGDCIRLKHYSCSCF |
| Ga0247724_10044115 | F080871 | N/A | MSNSQRFSCSRSTIGFNQPEGERLTSSQLWERRNQLTTILIGFINATPNIKGIEVGGEIKRYREFCKIIETIREIDPDYHLVVAPRSEDCLRIMHYDCLCNHSHGCKCALLKKKNLS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |