| Basic Information | |
|---|---|
| Taxon OID | 3300024239 Open in IMG/M |
| Scaffold ID | Ga0247724_1003765 Open in IMG/M |
| Source Dataset Name | Subsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2458 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.7 | Long. (o) | -98.594 | Alt. (m) | Depth (m) | 3933 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011367 | Metagenome / Metatranscriptome | 291 | Y |
| F016494 | Metagenome / Metatranscriptome | 246 | N |
| F019949 | Metagenome / Metatranscriptome | 226 | N |
| F028417 | Metagenome / Metatranscriptome | 191 | N |
| F039010 | Metagenome / Metatranscriptome | 164 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247724_10037652 | F016494 | N/A | MSQKDNDSGEIAMDNFTELTQLVKSTLQTVDELFPPKPEFSFENMMVQFYTLKSRIKKIDPSWKFENTDTSYVFEILKLLDAVNIEEIPDLQQNAKICQRLLHRVRIMKQINPSWSLDVEGIMKFLYPTLNAQIS |
| Ga0247724_10037653 | F028417 | GAG | MATNESLDKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQDPKFKFINSYNDYTFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPLWKINPTLIIEFINSTLSASARK |
| Ga0247724_10037654 | F019949 | N/A | MYQEKNRYSKRTLRFADDLLYNNSTIEDEAIKEILREELEKSIDKSAVFQLAFNTFKIEMQEIKLLRLVEKLLHTVDKMHNLSPLQKARKFSKIYELKQKVTQINPNWKISDSFHLKKYKILTLIDKIDVKEEYNSVANEEIYQQLINEVETAKRTNSTWQLDKELIIIKKIE |
| Ga0247724_10037655 | F039010 | AGGA | MEENEDLEASEVGSHRSDDSNEVKRRFHDFMSHETEILDQTLVEMISAVENTSENTIISQLERCFECIDNMMIYANQFINQAQSVNMKHFIRFYSLYDRIRHSIMRTLTIINNLRKRNLFQIVPLVKDLTLDLDEIKVLVSRTTLEQVEEVLEGYKIKRLYIRRKIENFI |
| Ga0247724_10037656 | F011367 | N/A | KEHSESVSRCHNSISHELENLDRILSEMICNMGNSSEDTILLKLRECLGCINGIIIHASQFIDQTQAIERTHPLGFDSLQEGVRTNMTKTLIVTSKLRERNLLKLLPLVKDLTLDLSEIKILVSRTTLRQIENFLERYRFKKSYIRKKVENFQT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |