NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247724_1002386

Scaffold Ga0247724_1002386


Overview

Basic Information
Taxon OID3300024239 Open in IMG/M
Scaffold IDGa0247724_1002386 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in Oklahoma, United States - OK STACK MC-2-E
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3244
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.7Long. (o)-98.594Alt. (m)Depth (m)3933
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023037Metagenome / Metatranscriptome211N
F023279Metagenome / Metatranscriptome210N
F028152Metagenome / Metatranscriptome192N
F054590Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0247724_10023861F023037N/AMNESQYNPNRLTTPAAAKLELISEIQASLNAIGSEENFGYNIQKVMRLYHAIEKLRQIEPFWLFEVRVISAAGTLV
Ga0247724_10023863F023279GAGMANSSKENTEAIIDTIKSELATGFKNCIDKIDTEKKVVDKYNWEIYVKMNKILHNSRRLDPQWTIEGDIGNSWSLSSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRVNNPRWSINKTRRSSPILLTPTQIGLQEESTS
Ga0247724_10023867F054590N/AMIENIAELRKNVGFTKLHRLANYKQRRQIADLLLGNDLKENEISHLIHVHNCLKQIDVLLKILEEIGGILLKNNVGSSDILFKKRKRNLIHPWTI
Ga0247724_10023868F028152N/AMDNIGEAIRSVTRIASKARPLLGPRRQEIYAVMHTNGDPYVIRACTNSLIVISEIEKIQNETENVCDYLFNHYFTSEYAKEKRALLVLQPGPVVSDKNFFSHRLESLKIQRENFVRVEKVSIGKLSVQYCLTPIFRDRLNRNLTLLHRLEDLIVDLESLYQYAKDKLEEKEKINFGVTEVRKISPYEYKDPREVNFKIPKVKDETKVVARIRNPTYLDFL
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