NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228633_1118195

Scaffold Ga0228633_1118195


Overview

Basic Information
Taxon OID3300024228 Open in IMG/M
Scaffold IDGa0228633_1118195 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 41D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053552Metagenome / Metatranscriptome141N
F065939Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0228633_11181951F053552N/AMKLTQLLKENEQRPLSNEVKKHFLEIVSTYNKYKE
Ga0228633_11181953F065939N/ANMKPGLKKHMKNEKDVLKLIKMGGARGIFDDKEIEYYKSGKPTKGDMKDFGGYVDAADRNGMAEYVYLYNIKDKKWYFADVYGDKKLKKLF

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