| Basic Information | |
|---|---|
| Taxon OID | 3300024228 Open in IMG/M |
| Scaffold ID | Ga0228633_1000035 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Monterey Bay, California, United States - 41D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 37351 |
| Total Scaffold Genes | 67 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (14.93%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.8313 | Long. (o) | -121.9047 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005132 | Metagenome / Metatranscriptome | 411 | Y |
| F006322 | Metagenome / Metatranscriptome | 376 | Y |
| F008384 | Metagenome | 334 | Y |
| F013231 | Metagenome / Metatranscriptome | 273 | Y |
| F030556 | Metagenome / Metatranscriptome | 185 | Y |
| F032817 | Metagenome / Metatranscriptome | 179 | Y |
| F092935 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0228633_100003535 | F030556 | N/A | MANDKVFVGKTNVVTTKFGEIVKVAFGPQDFEVLMNAKNEKGWVNLEMKDKRDGGKYFQLQGEYTGKPKAQAVNDGDDMPF |
| Ga0228633_100003541 | F092935 | N/A | MKSTVKERKDSHINSLILERKTAFANLVMAYLKFNVSDALNIVVEKDGNISINGNYYKLDVSDYTGCTENYIFYNPSSGRLLIQKNDVKKIYKLDVNLYDESVN |
| Ga0228633_100003545 | F013231 | N/A | METNRNYQNCKLIRNRVDLYLYEMSKLFTKIGIDSTEEEIQEAYRRENEYIDCIAKLDPEKAKNLRSSY |
| Ga0228633_100003547 | F008384 | N/A | LKKKTRYNKELVEHEAHLSVEQDAITNELGKFIYQRCIEISGSAFFTNGDDELKQALIDEAVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDKYGQRIKGKVVCIENGEKFTRLVKYVKDDNISKKL |
| Ga0228633_100003553 | F005132 | AGAAG | MVDIIFIDDNYLYKNFPLPKRLDRGALLALIQLEQYTSIQDLLGSCLYEDIEAKVLAETLDADEQELFKLVKYCLAMYSARAAISVLRSETARTKNEENKSDQMSLDAISSTVESKITYINKRIVNYILGKTAIKAIATAEGCDNDLFEAEDVYQDSSVFYPKSSTSDSEC |
| Ga0228633_100003563 | F032817 | N/A | MAFNCSIILSDIDINCNKRTTGGIKKAILTLQSDITITFNPSDETQVTNVDLLESDTVVFEHNKKDGTTSFGENKNTTNGLGLVATNIVIQSPVVDNKVNKIDYMSRREDIVCVLLHNNDSVSISGWMDGLTMNYEASSGTGVSDKSFVNINLNTESGIASLLLDSKSVFTDQTIFD |
| Ga0228633_10000359 | F006322 | AGGAG | MALKKDKKGNITKGRGSGLTGLQKAFLEGVYEKGIESGNKIAKDLGYTNYYRDRRTEGTAFHREVLKLVDSEAKSIEAAKGTNLTKLIAIRDTALANGDMKVAMDAIKIINDMQGYKAPMKVEQTKLDITATIDLTKQPDEEQGYIDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |