NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228666_1011551

Scaffold Ga0228666_1011551


Overview

Basic Information
Taxon OID3300024221 Open in IMG/M
Scaffold IDGa0228666_1011551 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 80D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2378
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F000754Metagenome / Metatranscriptome906Y
F003678Metagenome / Metatranscriptome474Y

Sequences

Protein IDFamilyRBSSequence
Ga0228666_10115511F000613AGGAGMPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTN
Ga0228666_10115513F003678N/AMDQFMLYAPLIIASMSLILCLYACMRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMMQLMQRQPNQQMNGQIKNVGG
Ga0228666_10115515F000754N/ASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG
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