NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247688_1015694

Scaffold Ga0247688_1015694


Overview

Basic Information
Taxon OID3300024186 Open in IMG/M
Scaffold IDGa0247688_1015694 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1088
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002496Metagenome / Metatranscriptome554Y
F028633Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0247688_10156941F028633AGGAMPAEFDVNTPRGQETINHTSSSGVVELAIRSAAFLGRPEIYGKKDIEKEKELAAIDFYNGKTQDGLDIVLIPKTYSTSPGINIHA
Ga0247688_10156942F002496N/ALVYGSLAQNPRGEDSSPEDYWTVGAIRGHSFYKVLSSKAPVASILNLNDVKSLQDLALAQDMTRGVILDSIFKQVDRLGNISVAVLQHYVTTDGKVKWDDKVSDKDKAEAVSPLLPLKRIMYKDNDDGMNWGRDSISVTPILNETHHIDQTIYNRLQWLAGLMQAAEPGSDVKIKDYFVNAVHISGDNYDNLKASLIKQAAALKSRVDSKDVQLDLDFEGTLKNLYAKEVAAAQGAKSAATTSPTSTGVTTSPAS
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