Scaffold Ga0247688_1000002

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0247688_1000002

Scaffold Ga0247688_1000002

Overview

Basic Information
Taxon OID	3300024186 Open in IMG/M
Scaffold ID	Ga0247688_1000002 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK29
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	396508
Total Scaffold Genes	372 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	117 (31.45%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006076	Metagenome	382	Y
F016391	Metagenome / Metatranscriptome	247	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247688_1000002349	F016391	N/A	MSGEILRYTDLAVAIQLAKANDMSTREIVRELTRGLVYADALKLARMAAPLLDIGVMEFMRLRKNK
Ga0247688_1000002359	F006076	N/A	MDELISTLVPPKQQASAQLLLDDPGSRNLIRQQLSQLAEDNAGLIPQKSFSWILCKLSTFGAGETDTLRIYQAFLSQLNQLGQMCRVVSGEGTHCKFDPPAAVANRITIGLGLFYEEAARRHQRRAAPSPQFYQQMATSCFAVTGYKTIATQLPEWLDFLRSNFVLPRQN

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