NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228668_1002954

Scaffold Ga0228668_1002954


Overview

Basic Information
Taxon OID3300024180 Open in IMG/M
Scaffold IDGa0228668_1002954 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 82D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5018
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033051Metagenome / Metatranscriptome178Y
F038239Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0228668_10029544F038239N/AMAGKYKKRHNFNDFIPRYTDTYTKEMDEEGLKILKWSMFDSPDSLGSGKRFMESEPVFILDTVFRKERLKGYIHLGYTSKAYADRIGLGLESEHRIGKAIKFKCINPAHRFRLVRGLIQYGVERIKLYDNSIYFDTEHNLKGEDLSFRHF
Ga0228668_10029548F033051N/AMKIILLKVLETIIPPFVKTIFKKKEKKRLIIELENHDIFSTLVRVRNEVANLKFYTHGEYDKVKTRMCYDFTKHKSIKCSARMLEIVRTRNIDSMDRDELKKLILDEQNYMHKEYIKAIRIEWDLKGVNPQDVDYVIHLFEKFRYDVIVSFEHRINSIFGSTYNKDNFSIMLAILEMWAMGIDLLPRDMSTTFESLNGKFKDIKYLS
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