| Basic Information | |
|---|---|
| Taxon OID | 3300024179 Open in IMG/M |
| Scaffold ID | Ga0247695_1000434 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6011 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 40.4449 | Long. (o) | -87.0297 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000719 | Metagenome | 923 | Y |
| F004395 | Metagenome | 440 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247695_10004346 | F000719 | GAGG | MPRNHFKHVAAVLLCFSFASIAQAAKGDDFNSVVKMIEQFYGVKHEGIPFLARAGMGAARTAARIKGGTARQIAEAGSIKLAVFEDQNFNGEFLKFRNTLNAALSETWLPFVQTVSGATEQNYIFTREASDKYVVLIVSIEQRDATVIQVTLSPTNFARLLKDPEGTGKAIAEEATINDQ |
| Ga0247695_10004347 | F004395 | AGGAG | MYKLRWNTLLLVVIAVLAALPVHAQEVEDTIRIKTRAVFLDALVKDRKTNLPISNLTQENFQVLDDGKPRPISYFTREGQARKPLALILILDLREDGAGRFLKETEILKAMENELAKLPPGDEVAILAMNIGEDEQRTWATEFTNDRAKIAAALAQVQEICAKKNPPPPAQTAPTDSTPVNKQVVSTETIPGKKGVVTRTTMSDGSVEVKRVSNNGKMTVDLGDVYDMAGAVREATLKAQQLRPNSQMSLVWMSDGIAPIFFEDRDATQQILIRDNVIFNSLTVELRTLFKFLLPVGKPIAGWLGMSLYGSAKLLAQQSGGEAVKVARVKDYGAGLQRIIGNLTARYSLGFTLAENENDDGRMHHLEVRVTAPDEKGKKRKLLVSSRQGYYMTYPPITQKQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |