NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247694_1008966

Scaffold Ga0247694_1008966


Overview

Basic Information
Taxon OID3300024178 Open in IMG/M
Scaffold IDGa0247694_1008966 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1230
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000624Metagenome / Metatranscriptome977Y
F017007Metagenome / Metatranscriptome243Y
F064567Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0247694_10089661F064567N/AMSAPSQFVFVARKAAAAQSLDPALVCAVIEQESSWNTWAMRYEPAFFAKYVAHLYTNNKVTASEAYARGFSWGLM
Ga0247694_10089663F000624N/AMPIHWSTILAALVPLGVQFVLFLRWLHRRMRNDEIVRAFVRDIATNHLPHIYAALHAIARKQGIDPQEPPLVRFVEFQGHRPND
Ga0247694_10089664F017007N/AQNQLAFTNTAFQRQMSALQGLSGLFGVDSNLLGRTLGIPSQLLNVRASVSRPGAGFFSSLGSGLGSTLGALPSALF

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