NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255040_10000071

Scaffold Ga0255040_10000071


Overview

Basic Information
Taxon OID3300024059 Open in IMG/M
Scaffold IDGa0255040_10000071 Open in IMG/M
Source Dataset NameSeawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)20517
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (85.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)49.2166667Long. (o)-123.5333333Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017486Metagenome / Metatranscriptome240N
F025716Metagenome / Metatranscriptome200Y
F049947Metagenome / Metatranscriptome146Y
F055202Metagenome / Metatranscriptome139Y
F058952Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0255040_1000007110F025716GGAGMDDKEVERMINAAGLIGAIFGFVSGAGLMAAVGIIF
Ga0255040_1000007120F017486AGGAMNKIIITNAHAHGFAFACDTETQGQVFIPVHIAEGFDLAPGDEIEAVLVPNYQDKSDKGTPWQAVKLQRDSMSDQHDNEVCEKVIIDNSQTLNNEWLDAEMLSYILSAGYYTTAELADYFEIDHKTAGNAAQRLFNAGKIAKADVFNRVGQQRPTIILWAAAAKTFIEVA
Ga0255040_1000007125F058952AGGAMTNDTKPSAQDVARWESIKQNMLDRADVVSGFADDEREALHELQWTSMSLSEDVCYLMEFSYSDVIEFCRAADFLCEEYSWNTSENEDKRDIGRKSLALAEALRGDAGDGPRLSFGQAKDFGGIYPRITSLLRTHPNKFQMERFAEHGITWEGEVDEH
Ga0255040_1000007132F055202N/AMTRRQSKAIRQQVKAALIQIGLGFAAGLAIAAVLFLNL
Ga0255040_100000717F049947GAGGMAKLTPAQKAKAKAMSAKRGVKYPNAWSNLAVAKGQKPKKKTATKTRTA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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