NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228709_1052497

Scaffold Ga0228709_1052497


Overview

Basic Information
Taxon OID3300023708 Open in IMG/M
Scaffold IDGa0228709_1052497 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)832
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001024Metagenome / Metatranscriptome803Y
F056352Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0228709_10524971F056352N/AAPRQSEADARKWKTVSKIIPGDWGKAGSGWLTPPLQAAGRKVRQAEAEFTSSSGGVRAPSNANEELGGKGRLEAVLSRVK
Ga0228709_10524972F001024GGAMRLMTPLSVENGVGKPAAARKGERLMSAWEREIGALPSPNLS

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