NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232114_109679

Scaffold Ga0232114_109679


Overview

Basic Information
Taxon OID3300023676 Open in IMG/M
Scaffold IDGa0232114_109679 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 55R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)939
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008104Metagenome / Metatranscriptome339Y
F016593Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0232114_1096791F016593N/ASFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQINIDLLSNDLEGGEYELTITNSGESYKYLTEVQDYTVTQTGTGIYGSTVRFTDL
Ga0232114_1096792F008104N/AMGLLSNISEFFASNTYVQATEHSIATNELENSIEDLNGRYRLGHTLVGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMVVGNDIDYSDDFAKSNKAKAELKAFVNHCGGNNKGLYEVLTHASFQYEHKGALAFYVRWNKGRTKILEFKSLDPKGVRVAEPNEKGEVTHYIVRRSFGYGSNSVQHNEPRKIKAFNKFDKSGTEALLYVA
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