| Basic Information | |
|---|---|
| Taxon OID | 3300023674 Open in IMG/M |
| Scaffold ID | Ga0228697_100188 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 90R (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4159 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.8313 | Long. (o) | -121.9047 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004461 | Metagenome / Metatranscriptome | 437 | Y |
| F032817 | Metagenome / Metatranscriptome | 179 | Y |
| F063074 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0228697_1001883 | F004461 | N/A | MSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGNSAATIGEKEMTVTTYKWSFLNCKNALESSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALTVAGTALTTEMAADASVLDFDTDAVLTSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA |
| Ga0228697_1001884 | F063074 | N/A | MACTVTLADIDYGCDDLGIGGIVELHVASRAAALTAITTKDDSTRVISAVSGAASDVVQFSFNLKDGFSVFSEVKTANADGTFSTVPTISAEFPKMDATRITALDQMSNGAPELVAFVKTAAGTHHVCGLDFGLYVSTIDGNSGTGRSEKNRFQLTLTGEEAGLSYSITDSLFGDITA |
| Ga0228697_1001885 | F032817 | N/A | MAFNCSILLSDIDINCNKRVTGGIKKAVLLLQKDLTITFNPLDETQVTQVDTLNAVSFEHNPKDGTTTFTENKNTSNGLGVVATDITIQTPAVDNKVNQIDLMSRREDICCVLLHNNDTVTISGWMDGLTMNYEANSGTGTGEKSYVNITLNTESGIASLAINDKSVFSDQTIFD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |