NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228694_105019

Scaffold Ga0228694_105019


Overview

Basic Information
Taxon OID3300023567 Open in IMG/M
Scaffold IDGa0228694_105019 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 80R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1383
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007974Metagenome / Metatranscriptome341Y
F064580Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0228694_1050192F007974N/AMSKRAKQGVDLRAPNPFHTKRMGRSHGPLVFNEHVGHKVTQKIDKAIKNNRKK
Ga0228694_1050195F064580N/AMNKEVVTKVSIKSSNSDWNPIYNSIQVGPADEAAGSFLRITGEDEQNGGNIIDLDWDEWDTLVKVVTKYRKDWEWK

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