NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0232120_101666

Scaffold Ga0232120_101666


Overview

Basic Information
Taxon OID3300023555 Open in IMG/M
Scaffold IDGa0232120_101666 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 89R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1036
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027881Metagenome / Metatranscriptome193Y
F101275Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0232120_1016661F027881N/AIMSLTVARSERVRGVLTHANCTKIKFNLSSVRVSNSLMTFIKFV
Ga0232120_1016662F101275GAGMILSGILGGLGGIPLITDVEPFKYEYRIGLETLVVRTLNQWALHVGNLYLARTLTLKCLAWGVLLQRLNLNRLA

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