NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1004686

Scaffold Ga0209414_1004686


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1004686 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5724
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024770Metagenome / Metatranscriptome204Y
F025725Metagenome / Metatranscriptome200Y
F041730Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_100468612F025725N/AMPSIIEDTVSILASMNLEGVRVATPPGYAGLQVDLPNNSQAYFVWSKIDNQDFHFRLARFWENDNPFSMVVCPSLPEAIAQTLVFVKQ
Ga0209414_10046865F041730AGGAGMALPSSLSTAIIVGTYVDLIGNPVRGSLSFVPQTILKEVTANVIIMPVVITKTLDATGSFTITLPVTSDTDVAPQPFIYDITENFTGGREIQIALPLSVAGTTQNLADLLPALSSAEAVAYVSTDQYQALLTRYTTAEGIRVIVVDAEDYEENALAYSQSATIAANEIASFTVKSLLFMG
Ga0209414_10046866F024770AGGAGMAVTHARVSVGTTATKLTSDADGKDGQTINVQNPAGGVDVYLGGDGVTTSAYGYLLKADSSFSIELQDDEKLYAVVTSSTQTVNIIRQGA
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