NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209414_1000398

Scaffold Ga0209414_1000398


Overview

Basic Information
Taxon OID3300023301 Open in IMG/M
Scaffold IDGa0209414_1000398 Open in IMG/M
Source Dataset NameHypersaline microbial communities from Lake Vida, Antarctica - Brine Hole Two >0.2 micron (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20695
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline → Hypersaline Microbial Communities From Lake Vida, Antarctica

Source Dataset Sampling Location
Location NameLake Vida, Antarctica
CoordinatesLat. (o)-77.38861Long. (o)161.931111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022145Metagenome215Y
F034486Metagenome / Metatranscriptome174Y
F054439Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209414_100039825F054439N/AMTYIKRNGSTIKQMAYARKLFGGQGSSKKQIALDSGYSAAVSNSVSSHIENKPGFNNAMSALAIDSNNLALAAMHEFKARGFEDFSNKDLVGALNAIGGAWAKFNAVTPKKDPDNNNGTNKLRTIILQQIENQTVMPGNNPPVDVKEDAGIHSIRDAEVTESDF
Ga0209414_100039828F034486AGGAMENEQSLKQKKIGLATSEHAPVIIELMKDCMQQVSSLIGETQWETSVNAITLDVQGKMLTTMVDHLENIRKGSLHNAQK
Ga0209414_100039829F022145N/AMSKKAIELKKKDYTIQVGYSPDAIKNKMMKFISKSGDEFEISADEMSSILISQVNSNTLEATFVESDRINVVEVGRQLECVLDEDMKKGEKIRINYTHPYPIEFALIEEAYKIAKIDMSIPKVTLTMKYIEEVKAKLKPEQAEYIDNFYKSFKNIKKN
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