NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222664_1028210

Scaffold Ga0222664_1028210


Overview

Basic Information
Taxon OID3300023296 Open in IMG/M
Scaffold IDGa0222664_1028210 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #604
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1076
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F049230Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0222664_10282101F002602N/AKALAVAIEEKDNQIRMLLAQQGNHEVQIAEYRQIVQELSDKLELYENKYGTVFRSARKD
Ga0222664_10282103F049230N/ALWGYKIKLPDDERITIYPINGEDLVKEHGGPLHIHIIDYEHIKFRRKRDAVMYALRNF

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.