NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222708_1001221

Scaffold Ga0222708_1001221


Overview

Basic Information
Taxon OID3300023242 Open in IMG/M
Scaffold IDGa0222708_1001221 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1576
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6445
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008122Metagenome338N
F010818Metagenome / Metatranscriptome298Y
F023240Metagenome211N

Sequences

Protein IDFamilyRBSSequence
Ga0222708_10012211F008122N/ATGLDYLNAGDPAITLYAILEADAQPSTALDALARIAQGTGATYYDDPRGRIIFEDYGNRGSTTFSGIWANQVGTWADAEGTWADYPLFPPSFNLEAPGVIFSPTWAKTLTPLINDITVTYGPDLTVNQTDSASITQYGRREYRLDTGIKTLGDATTRAAGIMTAQANGLWNLGQISVLVDQLDATDTTALLELVSGDLVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPGFAWSEVGPGAQWFEIVTNSDLVRL
Ga0222708_100122110F023240GGTGGVGDYLEGYVQALTNVLDDIDVEKCETVADVRRLIRQMLDDTDSE
Ga0222708_10012214F010818AGGVDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLADVSSKVDRIIEKLGL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.