NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222676_1013131

Scaffold Ga0222676_1013131


Overview

Basic Information
Taxon OID3300023240 Open in IMG/M
Scaffold IDGa0222676_1013131 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #870
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1546
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC203P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009178Metagenome322Y
F026307Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0222676_10131316F009178GGAMTIDKNLEGAWRICKNINGYLETQVYYFYTKKDAIRKFREHKKAIINK
Ga0222676_10131318F026307N/AAKMFTVKNIAESLLNIEKWKVKDLINIRKSALYSQSVVENYKDKIVEAWKDEDLKYLADLDYIALIDWKHYTEIEQRKVA

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