NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222650_1047780

Scaffold Ga0222650_1047780


Overview

Basic Information
Taxon OID3300023237 Open in IMG/M
Scaffold IDGa0222650_1047780 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #367
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)722
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002182Metagenome / Metatranscriptome586Y
F005795Metagenome390Y

Sequences

Protein IDFamilyRBSSequence
Ga0222650_10477801F002182AGGAMIYTDQENEWLSTPNNKRRVSNQTADGSAPRKQDYRKHDWAITTTIEIDGVSYVMPVQV
Ga0222650_10477802F005795N/ATVCAMALHENTYAVFELREQLLTLTLNLWELFEQLEYAADPLRERVYLDIGRIQSEIESIVRELMRLDSMEHPLSK

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