NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222650_1028009

Scaffold Ga0222650_1028009


Overview

Basic Information
Taxon OID3300023237 Open in IMG/M
Scaffold IDGa0222650_1028009 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #367
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1122
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034715Metagenome / Metatranscriptome174Y
F044513Metagenome / Metatranscriptome154N

Sequences

Protein IDFamilyRBSSequence
Ga0222650_10280091F044513AGGAGGMKRNSWIVKQMFADAKNNLGWVFKGVLVAGGFVAGIKILT
Ga0222650_10280095F034715N/ADTNCSRCGEKHIASRHQEEMTGWEDEDIEAEVEEIF

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