NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10196584

Scaffold Ga0214919_10196584


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10196584 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1520
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F083901Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101965843F083901GAGMTKQVSGKQAIHYRNYRRARDRALVRLAQLYPDTYKQLLVIERSFDEQEGKKWIGIDGFTNLSVGTHTRANGADAFIHTGDAQENQGNDGGEA
Ga0214919_101965845F001477AGGAGGMNNIYTIHPKKSPLILLYEVVDEEGKAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITDIIKAASL
Ga0214919_101965846F000821AGGAGMNKEYLEAKVDLCLNQAEIDLKQQEIARAIKNLERANTALSRIFNMEEGENE
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