NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10098864

Scaffold Ga0214919_10098864


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10098864 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2495
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Hnatkovirus → Hnatkovirus DS6A(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026210Metagenome / Metatranscriptome198Y
F066486Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100988644F026210GGAGMSPILGANPLDYDAKYPQSVDTSVNEDAKMFVMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVRSEALRFVEDIGTKI
Ga0214919_100988646F066486N/AMKNKTLSKNDPYYLKVGKFKKKAVYDAKVDMSDQMENTFENLGRKHITKEQYINIGFNYAVAKGIEYTKVLVNKKK

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