NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10061684

Scaffold Ga0214919_10061684


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10061684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3467
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F048101Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1006168410F048101AGGAGMKKKMKMKKFKTIKDYLETCSEDEREYIYDLYNNASVADLIDLLFEYLPADDTIQEIQEYREEMEWDNNEAKKLNKPKRKCDCDFVGCQGC
Ga0214919_100616842F016774N/AMPPKNNKIIITQDHLDSLNHWRNEALKLEKSYYSKDPEKERTCRNMINKYLDDVLTYNKNIKEKSKNKV
Ga0214919_100616846F062446AGGMIFNPIKVIAFMLIVLAWILMTFFFVGCANISYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY
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