NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10049215

Scaffold Ga0214919_10049215


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10049215 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4055
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042218Metagenome158Y
F055667Metagenome138Y
F058795Metagenome134Y
F078404Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1004921510F055667AGGMTKSEKREIAITLKMQHFGANYVARALSNLIRSARTAKSHNEIMAIAIDLGVTNNPEFIA
Ga0214919_100492153F078404GGAGGMREHYKPAPVARPWAGALLAVTIGLALAAILLEYL
Ga0214919_100492155F058795N/AMIHPLFEAILRPYAPPPTPEAIDAAMLADKLADGYFQRQINNAINLELRYANPEN
Ga0214919_100492158F042218AGGMLRSPSIKALKTLFGENAPRAKALLRMNRDQLLRTPIGAARAAECYHPPSTQDIRMECLNALGDFYGVESLNTKKGECMYLNAGDTYAATLVRFNGVYRITCWGDIAERHCA
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