NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10040893

Scaffold Ga0214919_10040893


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10040893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4601
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F012669Metagenome / Metatranscriptome278Y
F045700Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100408935F045700GGAMKTRPSQCFECETGTYKDVIVNYFSQLSGGRSCVTKDVTIQRCDTCGAEILDSKASKIIESNIERNFPGYYERTRSRRVEK
Ga0214919_100408936F000962AGGMNVHVPEELKNKYPHMEFRGKQRQLNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLQKAS
Ga0214919_100408937F012669N/AMSEQTYMKLGDVVKRPVFDVKTINRENPRFKHLVDSYQKWNSDNDIDEPRSTYENDIIECLGHYDLDGFALAQHLKDYVYVEPDSELVHILDDVLFVKSSLEREILAQWVKENFLTISDDVVGKKVNAKQGFRKYENHYITGIKPDTYQVTISDNINGKGGYIVGFENVTFVD
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