NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10028164

Scaffold Ga0214919_10028164


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10028164 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5955
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023292Metagenome210Y
F051701Metagenome143Y
F061801Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1002816411F023292N/AMNIAQVKEYVANQLKNYRVKDILDNFEDSEWLAMHKQITRTKPWETERRLIDYARMELDKFRYVLYTERHYEDLLIDKACIQCLKCTDECETERKYYVRRPHKGEKYE
Ga0214919_1002816412F061801AGGAMKTKPIYKNYDREIYMSEYTPIHKEHYRRLRTCAVVSLGINIFLLLVMVLR
Ga0214919_100281648F051701AGGAGMQVLIELNDDQADEVLVEALKSGYIVNRNFPDEPNFYEINQAFRTLLAYYMGDKEYAKYMHKMAKVRKNDTAKRLADAHNGL
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