NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10015596

Scaffold Ga0214919_10015596


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10015596 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8940
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006696Metagenome366Y
F071151Metagenome122Y
F091603Metagenome107Y
F103126Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100155961F103126GGAGMSESMQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWAAAERLTSARYKQEYDNLAQHCKQLELEIMELKR
Ga0214919_1001559610F091603AGGAGMTIGRFANGNDSKRRVLGLAGEWSAREKLPGEAQPPAISIWRQPVYQPPKMDTPRPGASDHLKVRSRGI
Ga0214919_100155963F006696GGAGMKFLKFLKDYWRDLTPAEVITKELAQAHLDRLEAEGAVEYAQAVLDLNLARIDRLNIRLGEYK
Ga0214919_100155964F071151GGAGMNCCNANGDCTQGRDCPVRKQRIKEVNDAYANGFKDAQLNDPIDDIAYTFRDFLTVMTVVLCVWVVCLLIWGK
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