NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10011240

Scaffold Ga0214919_10011240


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10011240 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11187
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008750Metagenome / Metatranscriptome328Y
F024742Metagenome / Metatranscriptome204Y
F088507Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100112404F024742GGAMNNETQRIMEALMLIYGSDLQAATITVLLKDGDTAVRFITQTLPQRETEK
Ga0214919_100112406F088507GGAGGMNCCNSHGECTQGRDCPIRKQRAEETNKAYINRSNGLEPDILDDFVASIKGLIAVIVVVTGITLIAFAIWGK
Ga0214919_100112409F008750AGGAGMRKVRFMELMKEPFKKPTPLEMIAAELSDAHLEKLNAETAVEYAQSIVDYNVTRITRLNARLEEYK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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