NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10005931

Scaffold Ga0214919_10005931


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10005931 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17012
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (72.73%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Associated Families14

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F001562Metagenome / Metatranscriptome670Y
F003422Metagenome / Metatranscriptome487Y
F003690Metagenome / Metatranscriptome473Y
F004051Metagenome / Metatranscriptome455Y
F004840Metagenome / Metatranscriptome421Y
F005741Metagenome / Metatranscriptome391Y
F011299Metagenome / Metatranscriptome292Y
F038241Metagenome / Metatranscriptome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000593110F011299AGGMMTRKHFEATAEILKFASDKIHPAVFSKMVNDFALMFAKENSNFNVNKFHEASGYHVPNFTSR
Ga0214919_1000593117F004051AGGAMTVDNKTYEVGDLFTTLKSNVTGVIKQIIPNSSGSVRVELDTDEGTRWTTVSKTN
Ga0214919_1000593119F005741AGGMAERFRVEIYDANKANDVTIYSNSGVDKEYLTELVFSNLRNFNGKVNAYVYDSHKKNKTTAMFLDEDTVAKAQLI
Ga0214919_1000593122F003422N/AVCTGDCDALIEYTYKDGFGWPNGVMQITCPCNSTCTLLSVEDATIPYTDTQLPTKEETMEETTVGTINDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKIASALTNKISLVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVESQNGNIEIVDTEVTNVREN
Ga0214919_1000593123F000311GAGMYFELTAPDRLSMEMAYWDAQITGLDPEAMSALTFNIGTGSIEKVSRLRDKYGLKESYVSDYQPTGYIRS
Ga0214919_1000593124F001043AGGAGMSEYKDGFTDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGNL
Ga0214919_1000593126F001125GGCGGMGDRANFGFRDHKGDIVFLYGHWAGHQMLGHLAEAVSAAEPRWTDESYATRICISNLIGESWQPLTGWGIYINQIGDNEHKIPVIDWANQTFTLYEEDLETIVFSSSLDAFVKKYSLSTSMV
Ga0214919_1000593129F000868GGTGGMSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQMFADYRFAEMSDSNYLKGRFNLFYDLNVGDQYYLECEEK
Ga0214919_100059313F003690GGAGMITSGIQLQLNNYGLEFDSFLGAIYLPWHSIAIATALLIAYKIYKRKKITK
Ga0214919_1000593130F038241GAGGMLGYTKTDLDEMGNAMHDAKLFYIMKSDVTHVDQDPLVEGLLKAQDFLEGLWAEGYFD
Ga0214919_1000593134F000441GGAGGMEMTNEYINDRLNIAQQLLWGGSETENIEAHNIIAELIKDRTETIGAK
Ga0214919_1000593135F000852GGAMATKREYLKSQGITVGVRGRFSGAAKTVIAEALAKGMTFTDPTPGTKTK
Ga0214919_100059315F001562GGAGMSMTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFSIGVIEHEDYMLERGELDDEEM
Ga0214919_100059319F004840GGAMYKVTCAYDENAPHWEQTYENEFGAWENFFLFTDWAFADEYSTVNLYTPTGKCYTRIFYREGRRVVTK

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