Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10005931 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 17012 |
Total Scaffold Genes | 44 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 32 (72.73%) |
Novel Protein Genes | 14 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 13 (92.86%) |
Associated Families | 14 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000311 | Metagenome / Metatranscriptome | 1326 | Y |
F000441 | Metagenome / Metatranscriptome | 1136 | Y |
F000852 | Metagenome / Metatranscriptome | 860 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001043 | Metagenome / Metatranscriptome | 794 | Y |
F001125 | Metagenome / Metatranscriptome | 769 | Y |
F001562 | Metagenome / Metatranscriptome | 670 | Y |
F003422 | Metagenome / Metatranscriptome | 487 | Y |
F003690 | Metagenome / Metatranscriptome | 473 | Y |
F004051 | Metagenome / Metatranscriptome | 455 | Y |
F004840 | Metagenome / Metatranscriptome | 421 | Y |
F005741 | Metagenome / Metatranscriptome | 391 | Y |
F011299 | Metagenome / Metatranscriptome | 292 | Y |
F038241 | Metagenome / Metatranscriptome | 166 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0214919_1000593110 | F011299 | AGG | MMTRKHFEATAEILKFASDKIHPAVFSKMVNDFALMFAKENSNFNVNKFHEASGYHVPNFTSR |
Ga0214919_1000593117 | F004051 | AGGA | MTVDNKTYEVGDLFTTLKSNVTGVIKQIIPNSSGSVRVELDTDEGTRWTTVSKTN |
Ga0214919_1000593119 | F005741 | AGG | MAERFRVEIYDANKANDVTIYSNSGVDKEYLTELVFSNLRNFNGKVNAYVYDSHKKNKTTAMFLDEDTVAKAQLI |
Ga0214919_1000593122 | F003422 | N/A | VCTGDCDALIEYTYKDGFGWPNGVMQITCPCNSTCTLLSVEDATIPYTDTQLPTKEETMEETTVGTINDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKIASALTNKISLVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVESQNGNIEIVDTEVTNVREN |
Ga0214919_1000593123 | F000311 | GAG | MYFELTAPDRLSMEMAYWDAQITGLDPEAMSALTFNIGTGSIEKVSRLRDKYGLKESYVSDYQPTGYIRS |
Ga0214919_1000593124 | F001043 | AGGAG | MSEYKDGFTDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGNL |
Ga0214919_1000593126 | F001125 | GGCGG | MGDRANFGFRDHKGDIVFLYGHWAGHQMLGHLAEAVSAAEPRWTDESYATRICISNLIGESWQPLTGWGIYINQIGDNEHKIPVIDWANQTFTLYEEDLETIVFSSSLDAFVKKYSLSTSMV |
Ga0214919_1000593129 | F000868 | GGTGG | MSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQMFADYRFAEMSDSNYLKGRFNLFYDLNVGDQYYLECEEK |
Ga0214919_100059313 | F003690 | GGAG | MITSGIQLQLNNYGLEFDSFLGAIYLPWHSIAIATALLIAYKIYKRKKITK |
Ga0214919_1000593130 | F038241 | GAGG | MLGYTKTDLDEMGNAMHDAKLFYIMKSDVTHVDQDPLVEGLLKAQDFLEGLWAEGYFD |
Ga0214919_1000593134 | F000441 | GGAGG | MEMTNEYINDRLNIAQQLLWGGSETENIEAHNIIAELIKDRTETIGAK |
Ga0214919_1000593135 | F000852 | GGA | MATKREYLKSQGITVGVRGRFSGAAKTVIAEALAKGMTFTDPTPGTKTK |
Ga0214919_100059315 | F001562 | GGAG | MSMTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFSIGVIEHEDYMLERGELDDEEM |
Ga0214919_100059319 | F004840 | GGA | MYKVTCAYDENAPHWEQTYENEFGAWENFFLFTDWAFADEYSTVNLYTPTGKCYTRIFYREGRRVVTK |
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