NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214919_10002764

Scaffold Ga0214919_10002764


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10002764 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27180
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (91.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004721Metagenome / Metatranscriptome426Y
F019799Metagenome / Metatranscriptome227Y
F039991Metagenome / Metatranscriptome162N
F057904Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000276411F057904GGTGGMGLHQIQTHPEYVEGCFGCKIQLLELSTGDARGDVIASGTTQKKWNSELEAYRSARAQGIQPNGTKMKQVQAAHEASEKLGVAYDGNTMVQAKKIDKPTATVMRELKEAGIQ
Ga0214919_1000276419F019799AGGAGMATSRKRTVKTVADESYSKLDQYAIELHEFFKSLRKAGFTVDNSLWLLASKESYPDWMRTLTPEDIRKHIEDEEDE
Ga0214919_100027643F004721GGAMALGKEGSSLTAELNRLAGTTGKAQQGAANTYASTTGLGVVAALNIKASGSRQPSAYKGLNAVCNELASTTGKSAVAALRSINV
Ga0214919_100027647F039991AGGMAKQKKETLAVAWCDNGMVDGKFMEGVVDTLINSGVEFCGSLRAHGNQIAQQREMLVNRWYDNNKSDWLLWLDSDIMITPEKFLKLWNRRDAVDIPLLTGVYFTSNEPEQPLMKPLATVYEFAEAEFGIGIRRLDPLPKNTFIKVSAAGMGFCLMHRSVITRIKKALPGVPFFTEVGANKQFTGEDIYFFAVVNKAEIPLWCDTAATVGHMKRFNMDENYYDAFGRGKGYAN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.