NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001407

Scaffold Ga0214919_10001407


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001407 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39504
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (73.42%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005563Metagenome / Metatranscriptome396Y
F027400Metagenome / Metatranscriptome194Y
F075663Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000140747F005563GGAMIDYYQALKEMHKGNVVKYVGTVNGNVMSDNGASFCMCRGCVFLFDAGVIKWNKLGYMVYDPDFRYELTGETVDPRAWKPERNSDRKEIKRRLDYSRIGRNNV
Ga0214919_1000140766F027400AGGMTNSELIAKLEQAQALLADVYHWADMPMSNGLQVSPLKTNAVIAQALSCADSCIIEALDELEYLE
Ga0214919_1000140772F075663N/AMNLTKNETIALIIECLVTTGYSDADAFVNYCTMILPMMSTEDLQCELELLEDNAIGLSQ
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