NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001038

Scaffold Ga0214919_10001038


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001038 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46849
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (88.41%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F012212Metagenome / Metatranscriptome282Y
F016937Metagenome / Metatranscriptome243Y
F025685Metagenome200Y
F057986Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100010382F016937GGAGMYTAQVNAHGNVIVCKGDAVRNSYRIIFTGTYAECLKVKAGAA
Ga0214919_1000103822F025685AGGAGMKLLADFFALIGLVSTIIVAGFYLGYATYQPECYTVASVFTKECK
Ga0214919_1000103823F057986AGGAGMIAMMKRLLATPSPLEMAAKELVAAQRAKLEAESACEYAANMVQYNEDRISRLKRRVDELQGEIA
Ga0214919_1000103851F000273AGGMSEEKIQAIETKSALVEKITFALLPLLFSCVVYLMSALSNLSHEVTILNSKISLVVTSDNKQASNTGAELAREKLRQDLEKEIQKNRDDIQVNRLHIAILEDRAGMKTTFKKEDK
Ga0214919_1000103853F012212N/AVLDQLVSADNPWPNTDTKTVLVCRIPKKDDKPSANEFVDKDGRICRWAVVNKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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