NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10070095

Scaffold Ga0214923_10070095


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10070095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2523
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001091Metagenome / Metatranscriptome781Y
F022836Metagenome / Metatranscriptome212Y
F049411Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100700952F049411AGGAGLEKYSAQVVEVCENGDAILQFSEEMIQDLGWKVDDVLSISMVDGAVHLKNITKHPELFKD
Ga0214923_100700954F001091N/AMLLKKENMNIREIAKRVAIEYRLPRADRYDLYLRQYDNMVEVLGWMQDPSADMNDYRGREMLFPKRWITIGVLPAGEKIRV
Ga0214923_100700956F022836N/AMTIKLVTFKTNHTILAEIECVSNDDITITKPVQVVVQPSKEGPMMAFVPFLNFATEFETGIKISMDNVLCITTPNVELENQYNQVFGSGIQIASSIPKF
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