NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10057786

Scaffold Ga0214923_10057786


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10057786 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2892
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000340Metagenome / Metatranscriptome1267Y
F023572Metagenome209Y
F036206Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100577861F036206N/AMDMLQKVKTTKLMMRIGTGITEGKLCPAGEHTSGKLPSGGFQAVWNFKNDVPNDYFTRKESPTSGGGKKVY
Ga0214923_100577863F000340GAGGVSWSDALKAVIPIVVMALAWLLGQVNSFSERLTKIEGSMPALITKEGTPTDSPISAERRHVMKEEIYKDIHQLQVKVQLLEEREKLSKKP
Ga0214923_100577867F023572AGCAGMGVQVMAYTPKAKRGLYYNINKRRAAGLPAKKPGQRGYPTAEAFRKSKRTAKR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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