NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10032719

Scaffold Ga0214923_10032719


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10032719 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4288
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004547Metagenome433Y
F006019Metagenome / Metatranscriptome383Y
F009394Metagenome / Metatranscriptome318Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_100327191F006019GGAMTFITENNIANLYSALIEFPVFDEYKLPPASTVEFLVVHDSSMYGQYEPPEAGEPHTITISTAKCGHLDTVMKTLAHEIIHMICYIEAPKTEKYTSHKGLFLKLQKRV
Ga0214923_100327193F004547GGAMKALAYFTVLVVFWLLLIDTPYSKELVKEMSMATEAGEIVLTSEECIFKKMGLQGYEYAAYATDRGHPNHEGCWKSDSYEGKHAVYIYFPEINQTAVFDAKLFKPKATI
Ga0214923_100327194F009394AGGAMVKTDVESRLSTHEEVCALRYEQINARLKRLEQILLGTAGFIIVYLLTHGMK
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