NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10010723

Scaffold Ga0214923_10010723


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10010723 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9277
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F004132Metagenome / Metatranscriptome451Y
F019324Metagenome / Metatranscriptome230Y
F044490Metagenome154N

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1001072310F019324GGAMSMLGYERDDLDNMVIAVESALTTVNSDDDPWLHRNLTQASDFLQGLWAEGYFD
Ga0214923_1001072315F004132AGGAMSEVMTQEQLSVPYNPNLLVTYKAIPDTYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEEQIAEWYDPNYTKEEVLQAIIEHFGFNPTKEIEVQGTVSFSGTINIPLSEIEDFDLSNVTIDVDLNSYEYDADLTVDEVSLEDHY
Ga0214923_1001072324F000808AGGAGMEYNYSLTTSYDGELIHTLRVSDMLEAIRAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYADGNVVIK
Ga0214923_100107234F044490AGGMRIRVLRASKEEKVAVAIGRLLSDFHLDLEKVGFYVAKSLPHTIYRRALEVLQSAEFQENEVEQNKLGYRNDRLY
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