NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214923_10007488

Scaffold Ga0214923_10007488


Overview

Basic Information
Taxon OID3300023179 Open in IMG/M
Scaffold IDGa0214923_10007488 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11897
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (38.46%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014710Metagenome / Metatranscriptome260Y
F026209Metagenome / Metatranscriptome198Y
F036073Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0214923_1000748811F014710N/AMTQTINGIDYKVIPTQFKKKGFTYTQLRRDGMKAIFQQTRDDSTINNYEVVKIGRHNGYNMGGSYIEPSETYPGSSLWGITGWTCTSIDDALTRYNKLD
Ga0214923_100074884F026209N/AMCMMNKEVTYEIYDQMIGDWRKVSEPAIGGIKWEKREQIGDEVQSAYYDNSFYKVPFYGPYDQGRIHRALNNLYPARFNKFGGYTTVSSVEKLDDQHIKVELCYHIGD
Ga0214923_100074888F036073N/AMTTEQTTGYETPYNAELHCKKIAWMVKNSADWDAEKQTLEEYLDTLPDYPTDTQVAEFNHLYVAPFVPFKKEKPQGEEVNE
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